Why is "Pseudoknot" trending?

Search Interest Perspective

• Accurate prediction of RNA secondary structure including pseudoknots through solving minimum-cost flow with learned potentials - Nature
• NMR Studies of Genomic RNA in 3′ Untranslated Region Unveil Pseudoknot Structure that Initiates Viral RNA Replication in SARS-CoV-2 - ACS Publications
• Metal ions and flexibility in a viral RNA pseudoknot at atomic resolution - PNAS
• Pseudoknots: RNA Structures with Diverse Functions - PLOS
• Zika virus produces noncoding RNAs using a multi-pseudoknot structure that confounds a cellular exonuclease - Science | AAAS
• Structural dynamics of single SARS-CoV-2 pseudoknot molecules reveal topologically distinct conformers - Nature
• Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations - PNAS
• All-at-once RNA folding with 3D motif prediction framed by evolutionary information - Nature
• Possible involvement of three-stemmed pseudoknots in regulating translational initiation in human mRNAs - PLOS
• Heterogeneous and multiple conformational transition pathways between pseudoknots of the SARS-CoV-2 frameshift element - PNAS
• The structure and catalytic mechanism of a pseudoknot-containing hammerhead ribozyme - Nature
• Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of –1 ribosomal frameshifting - PNAS
• Length-dependent motions of SARS-CoV-2 frameshifting RNA pseudoknot and alternative conformations suggest avenues for frameshifting suppression - Nature
• Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting - PNAS
• Gene editing with CRISPR-Cas12a guides possessing ribose-modified pseudoknot handles - Nature
• Heterogeneous and multiple conformational transition pathways between pseudoknots of the SARS-CoV-2 frameshift element - PNAS
• Pseudoknot length modulates the folding, conformational dynamics, and robustness of Xrn1 resistance of flaviviral xrRNAs - Nature
• Mechanical unfolding kinetics of the SRV-1 gag-pro mRNA pseudoknot: possible implications for −1 ribosomal frameshifting stimulation - Nature
• Role of an RNA pseudoknot involving the polyA tail in replication of Pepino mosaic potexvirus and related plant viruses - Nature
• A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting - Nature
• Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot - Nature
• Resected RNA pseudoknots and their recognition by histidyl-tRNA synthetase - PNAS
• Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome - Science | AAAS
• Telomerase RNA structural heterogeneity in living human cells detected by DMS-MaPseq - Nature
• Benchmarking implementations of functional languages with ‘Pseudoknot’, a float-intensive benchmark - Cambridge University Press & Assessment
• Nanopore electric snapshots of an RNA tertiary folding pathway - Nature
• Structural switching dynamically controls the doubly pseudoknotted Rous sarcoma virus–programmed ribosomal frameshifting element - PNAS
• Scientists Produce 3-D Image of Retroviral RNA Structure - Lawrence Berkeley National Laboratory (.gov)
• Sequential structure probing of cotranscriptional RNA folding intermediates - Nature
• An emerging consensus for telomerase RNA structure - PNAS
• The frameshift signal of HIV-1 involves a potential intramolecular triplex RNA structure - PNAS
• New opportunities for designing effective small interfering RNAs - Nature
• In silico analysis of local RNA secondary structure in influenza virus A, B and C finds evidence of widespread ordered stability but little evidence of significant covariation - Nature
• xrRNAs adopt a long-lived conformation that prevents exonuclease activity - Nature
• Interferon- mRNA attenuates its own translation by activating PKR: A molecular basis for the therapeutic effect of interferon- in multiple sclerosis - Nature
• TMV mutants with poly(A) tracts of different lengths demonstrate structural variations in 3′UTR affecting viral RNAs accumulation and symptom expression - Nature
• Structure and mechanisms of ribosomal frameshifting during SARS-CoV-2 translation - News-Medical
• Unique motifs and hydrophobic interactions shape the binding of modified DNA ligands to protein targets - PNAS
• The conserved structure of plant telomerase RNA provides the missing link for an evolutionary pathway from ciliates to humans - PNAS
• Mechanistic analysis of Riboswitch Ligand interactions provides insights into pharmacological control over gene expression - Nature
• The energy landscape of −1 ribosomal frameshifting - Science | AAAS
• coordination at the cleavage site of the env22 twister ribozyme - Nature